In biochemistry, an Eadie–Hofstee plot (or Eadie–Hofstee diagram) is a graphical representation of the Michaelis–Menten equation in enzyme kinetics. It has been known by various different names, including Eadie plot, Hofstee plot and Augustinsson plot. Attribution to Woolf is often omitted, because although Haldane and Stern[1] credited Woolf with the underlying equation, it was just one of the three linear transformations of the Michaelis–Menten equation that they initially introduced. However, Haldane indicated in 1957 that Woolf had indeed found the three linear forms:[2]
In 1932, Dr. Kurt Stern published a German translation of my book Enzymes, with numerous additions to the English text. On pp. 119–120, I described some graphical methods, stating that they were due to my friend Dr. Barnett Woolf. [...] Woolf pointed out that linear graphs are obtained when is plotted against , against , or against , the first plot being most convenient unless inhibition is being studied.
Derivation of the equation for the plot
The simplest equation for the rate of an enzyme-catalysed reaction as a function of the substrate concentration is the Michaelis-Menten equation, which can be written as follows:
in which is the rate at substrate saturation (when approaches infinity, or limiting rate, and is the value of at half-saturation, i.e. for , known as the Michaelis constant. Eadie[3] and Hofstee[4] transformed this into straight-line relationship. Multiplication of both sides by gives:
This can be directly rearranged to express a straight-line relationship:
which shows that a plot of against is a straight line with intercept on the ordinate, and slope (Hofstee plot).
In the Eadie plot the axes are reversed:
with intercept on the ordinate, and slope .
These plots are kinetic versions of the Scatchard plot used in ligand-binding experiments.
Attribution to Augustinsson
The plot is occasionally attributed to Augustinsson[5] and referred to the Woolf–Augustinsson–Hofstee plot[6][7][8] or simply the Augustinsson plot.[9] However, although Haldane, Woolf or Eadie were not explicitly cited when Augustinsson introduced the versus equation, both the work of Haldane[10] and of Eadie[3] are cited at other places of his work and are listed in his bibliography.[5]: 169 and 171
Effect of experimental error
Experimental error is usually assumed to affect the rate and not the substrate concentration , so is the dependent variable.[11] As a result, both ordinate and abscissa are subject to experimental error, and so the deviations that occur due to error are not parallel with the ordinate axis but towards or away from the origin. As long as the plot is used for illustrating an analysis rather than for estimating the parameters, that matters very little. Regardless of these considerations various authors[12][13][14] have compared the suitability of the various plots for displaying and analysing data.
Use for estimating parameters
Like other straight-line forms of the Michaelis–Menten equation, the Eadie–Hofstee plot was used historically for rapid evaluation of the parameters and , but has been largely superseded by nonlinear regression methods that are significantly more accurate when properly weighted and no longer computationally inaccessible.
Making faults in experimental design visible
As the ordinate scale spans the entire range of theoretically possible vales, from to one can see at a glance at an Eadie–Hofstee plot how well the experimental design fills the theoretical design space, and the plot makes it impossible to hide poor design. By contrast, the other well known straight-line plots make it easy to choose scales that suggest that the design is better than it is. Faulty design, as shown in the right-hand diagram, is common with experiments with a substrate that is not soluble enough or too expensive to use concentrations above , and in this case cannot be estimated satisfactorily. The opposite case, with values concentrated above (left-hand diagram) is less common but not unknown, as for example in a study of nitrate reductase.[15]
^Haldane, John Burdon Sanderson; Stern, Kurt Günter (1932). Allgemeine Chemie der Enzyme. Wissenschaftliche Forschungsberichte, Naturwissenschaftliche Reihe, herausgegeben von Dr. Raphael Eduard Liesegang. Vol. 28. Dresden and Leipzig: Theodor Steinkopff. pp. 119–120. OCLC964209806.
^Kobayashi H, Take K, Wada A, Izumi F, Magnoni MS (June 1984). "Angiotensin-converting enzyme activity is reduced in brain microvessels of spontaneously hypertensive rats". Journal of Neurochemistry. 42 (6): 1655–1658. doi:10.1111/j.1471-4159.1984.tb12756.x. PMID6327909. S2CID20944420.
^Quamme GA, Freeman HJ (July 1987). "Evidence for a high-affinity sodium-dependent D-glucose transport system in the kidney". The American Journal of Physiology. 253 (1 Pt 2): F151 –F157. doi:10.1152/ajprenal.1987.253.1.F151. PMID3605346. S2CID28199356.
^Cornish-Bowden A (27 February 2012). Fundamentals of Enzyme Kinetics (4th ed.). Weinheim, Germany: Wiley-Blackwell. pp. 51–53. ISBN978-3-527-33074-4.
^Buc, J.; Santini, C. L.; Blasco, F.; Giordani, R.; Cárdenas, M. L.; Chippaux, M.; Cornish-Bowden, A.; Giordano, G. (1995). "Kinetic studies of a soluble αβ complex of nitrate reductase A from Escherichia coli: Use of various αβ mutants with altered β subunits". Eur. J. Biochem. 234 (3): 766–772. doi:10.1111/j.1432-1033.1995.766_a.x.