Physical chemist and computational biologist
Philip Eric Bourne (born 1953) is an Australian bioinformatician ,[ 10] non-fiction writer,[ 7] and businessman.[ 9] He is currently Stephenson Chair of Data Science and Director of the School of Data Science and Professor of Biomedical Engineering[ 11] and was the first associate director for Data Science at the National Institutes of Health , where his projects include managing the Big Data to Knowledge initiative, and formerly Associate Vice Chancellor at UCSD .[ 12] He has contributed to textbooks and is a strong supporter of open-access literature and software. His diverse interests have spanned structural biology , medical informatics , information technology , structural bioinformatics , scholarly communication and pharmaceutical sciences .[ 10] His papers are highly cited, and he has an h-index above 80.[ 13] [ 14] [ 5]
Education
Bourne was trained as a physical chemist in the mid to late 1970s and obtained his PhD in 1979[ 6] at the Flinders University .
Career and research
After his PhD, Bourne moved to the University of Sheffield to do postdoctoral research during 1979–1981,[ 15] followed by a move to Columbia University , New York, in 1981. In 1995 he moved to University of California, San Diego , where he was a Professor in the Department of Pharmacology. In 2014, he moved to NIH to become its associate director for Data Science. In January 2017, it was announced that he had accepted a position as director of University of Virginia 's Data Science Institute.[ 16]
He is known for writing the book Unix for VMS Users (1990)[ 7] and for being co-developer of the Combinatorial Extension algorithm for the three-dimensional alignment of protein structures ,[ 17] together with I. Shindyalov (1998). In 1999 he became co-director of the Protein Data Bank .[ 18] He was president of the ISCB (2002–2003).[ 19] He is a fellow of the American Medical Informatics Association since 2002.[ 20] He is founding Editor in Chief of PLoS Computational Biology (2005-). In 2007 he co-founded SciVee .[ 9] Bourne is an editor of the popular Ten Simple Rules series of editorials published in the PLoS Computational Biology journal.[ 21] He has served as the Associate Vice Chancellor for Innovation and Industrial Alliances[ 12] and a professor of pharmacology at the Skaggs School of Pharmacy and Pharmaceutical Sciences at the University of California, San Diego (UCSD).[ 22] [ 23]
He is an advisor to the Hypothes.is project[ 24] and associate director for Data Science at the National Institutes of Health where his projects include managing the Big Data to Knowledge initiative.[ 25] [ 26]
Publications
Bourne is author of numerous scientific articles and book chapters and editor of the Structural Bioinformatics textbook.[ 27] [ 28] and Pharmacy Informatics [ 29] Other publications[ 5] include:
Structural Bioinformatics 1st edition [ 27]
Structural Bioinformatics 2nd edition[ 28]
Pharmacy Informatics [ 29]
Unix for Vms Users [ 7]
Bourne, Philip E. (1997-01-01). A Cookbook for Serving the Internet for UNIX . Prentice Hall. ISBN 9780135199923 .
Hart, David L.; Bourne, Philip E. (1998-08-12). Mac OS 8 Web Server Cookbook (1st ed.). Prentice Hall PTR. ISBN 9780135200162 .
Bourne, Philip E. (2000-01-01). Underground Guide Unix . Prentice Hall. ISBN 9780131844582 .
Berman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T. N.; Weissig, H.; Shindyalov, I. N.; Bourne, P. E. (2000-01-01). "The Protein Data Bank" . Nucleic Acids Research . 28 (1): 235– 242. doi :10.1093/nar/28.1.235 . ISSN 0305-1048 . PMC 102472 . PMID 10592235 .
Awards and honors
Bourne was elected Fellow of the AAAS under Pharmaceutical Sciences in 2011[ 1] and Fellow of the International Society for Computational Biology (ISCB) in 2011.[ 2]
In 2010 he won Microsoft's Jim Gray e-Science award[ 3] and in 2009 won the Benjamin Franklin Award (2009).[ 4] [ 30]
Personal life
Bourne has been married since 1983 to Roma Chalupa and they have two children: Scott Bourne (1985-) and Melanie Bourne (1997-).[citation needed ] His interests include motorcycles,[ 31] flying, and hiking
References
^ a b "Dr. Phil Bourne elected AAAS Fellow under Pharmaceutical Sciences" . Pharmacy.ucsd.edu. Retrieved 2011-02-27 .
^ a b "ISCB fellows" . Archived from the original on 2015-03-28. Retrieved 2011-08-15 .
^ a b "Philip E. Bourne wins Microsoft's 2010 Jim Gray eScience Award" . Eurekalert.org. 2010-10-18. Retrieved 2011-02-27 .
^ a b "Benjamin Franklin Award" . Bioinformatics.org. Retrieved 2011-02-27 .
^ a b c Philip Bourne publications indexed by Google Scholar
^ a b Bourne, Philip Eric (1979). Crystal structure analyses : metal complexes of biological interest and the stereochemistry of substituted phonylbicyclooctanes (PhD thesis). Flinders University. OCLC 708090572 .
^ a b c d Bourne, Phil E (1990). Unix for VMS Users . Digital Press Newton, MA, USA. ISBN 1-55558-034-3 .
^ Berman, H. M. ; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T.; Weissig, H.; Shindyalov, I.; Bourne, P. (2000). "The Protein Data Bank" . Nucleic Acids Research . 28 (1): 235– 242. doi :10.1093/nar/28.1.235 . PMC 102472 . PMID 10592235 .
^ a b c Fink, JL; Bourne, PE (2007). "Reinventing Scholarly Communication for the Electronic Age" . CTWatch Quarterly . 3 (3).
^ a b Philip Bourne publications indexed by the Scopus bibliographic database. (subscription required)
^ "Philip e. Bourne" . 6 July 2017.
^ a b "Archived copy" (PDF) . Archived from the original (PDF) on 2012-07-31. Retrieved 2012-07-02 .{{cite web }}
: CS1 maint: archived copy as title (link )
^ page at the University of Virginia
^ bournes old website
^ Clegg, G. A.; Stansfield, R. F. D.; Bourne, P. E.; Harrison, P. M. (1980). "Helix packing and subunit conformation in horse spleen apoferritin". Nature . 288 (5788): 298– 300. Bibcode :1980Natur.288..298C . doi :10.1038/288298a0 . PMID 7432529 . S2CID 4335735 .
^ "UVA Names NIH Researcher as New Director of Data Science Institute" . 11 January 2017.
^ Shindyalov, I. N.; Bourne, P. E. (1998). "Protein structure alignment by incremental combinatorial extension (CE) of the optimal path" . Protein Engineering Design and Selection . 11 (9): 739– 747. doi :10.1093/protein/11.9.739 . PMID 9796821 .
^ Berman, H. M. ; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T.; Weissig, H.; Shindyalov, I.; Bourne, P. (2000). "The Protein Data Bank" . Nucleic Acids Research . 28 (1): 235– 242. doi :10.1093/nar/28.1.235 . PMC 102472 . PMID 10592235 .
^ "ISCB — Past Presidents" . Archived from the original on August 28, 2015. Retrieved September 3, 2015 .
^ Greenes, R. A.; Madsen, E.; Miller, R. A. (2003). "American College of Medical Informatics Fellows and International Associates, 2002" . Journal of the American Medical Informatics Association . 10 (3): 281– 286. doi :10.1197/jamia.M1326 . PMC 400512 .
^ Ten Simple Rules
^ http://www.sdsc.edu/pb/ The Bourne lab web page
^ http://www.sdsc.edu/~bourne/CV.pdf Philip E. Bourne Ph.D. CV
^ Hypothes.is official website
^ NIH Names Dr. Philip E. Bourne First Associate Director for Data Science
^ Margolis, R.; Derr, L.; Dunn, M.; Huerta, M.; Larkin, J.; Sheehan, J.; Guyer, M.; Green, E. D. (2014). "The National Institutes of Health's Big Data to Knowledge (BD2K) initiative: capitalizing on biomedical big data" . Journal of the American Medical Informatics Association . 21 (6): 957– 8. doi :10.1136/amiajnl-2014-002974 . ISSN 1067-5027 . PMC 4215061 . PMID 25008006 .
^ a b Bourne, Philip E.; Weissig, Helga (2003). Structural Bioinformatics . John Wiley & Sons.
^ a b Gu, Jenny; Bourne, Philip E. (March 2009). Structural Bioinformatics (2nd ed.). Wiley-Blackwell. ISBN 978-0-470-18105-8 .
^ a b Anderson, Philip O.; Bourne, Philip E. (December 2009). Pharmacy Informatics . CRC Press. ISBN 978-1-4200-7175-7 .
^ "The Bourne Commendation: Open Access Evangelist Wins 2009 Benjamin Franklin Award" . Bio-itworld.com. Retrieved 2011-02-27 .
^ OFL | Philip Bourne | Travel Blog
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