Secretoglobin

Available protein structures:
Pfam	structures / ECOD
PDB	RCSB PDB; PDBe; PDBj
PDBsum	structure summary

Secretoglobin
Secretoglobin
Identifiers
Symbol	Secretoglobin
Pfam	PF01099
InterPro	IPR016126
PROSITE	PS51311
SCOP2	d1utra_ / SCOPe / SUPFAM
CDD	cd00633
Pfam
Available protein structures:
Pfam	structures / ECOD
PDB	RCSB PDB; PDBe; PDBj
PDBsum	structure summary

Secretoglobins (SCGBs) are a family of small, alpha-helical, disulfide linked, dimeric proteins found only in mammals. This family was formerly known as the Uteroglobin/Clara cell 10-kDa family, after the two aliases of its founding member Uteroglobin.

Structure and function

The proteins are mostly alpha-helical, and the dimer is formed in an antiparallel way. The dimer interface features a cavity formed across the two monomers, which can accommodate small to medium sized ligands like steroids and phospholipids.^[1] The binding and release may be coupled with the redox state of the cystines, i.e. the presence of these disulfide bonds.^[2]

Many have regulatory functions.

Classification

The family was classified by sequence homology into 6 subfamilies in 2006.^[3] The human and mouse genomes only contain the first three families, per a 2011 update. Not every family is monophyletic.^[4]

Subfamily		Group		Member
Subfamily		Group		Symbol^[4]	Name	Ligand(s)
1	UGB	A	UGB	SCGB1A1	Uteroglobin (UGB); blastokinin, CCSP	phosphatidylcholine, phosphatidylinositol, PCB
		B	ABPA-like	Scgb1b2 (rodent)		in general: steroid pheromones
		C		SCGB1C1
		C		SCGB1C2
		D	Lipophilin A/B
2		A	Mammaglobin	SCGB2A1	Mammaglobin-B; lipophilin-C
		A	Mammaglobin	SCGB2A2	Mammaglobin-A
		B	ABPBG-like	Scgb2b1 (rodent)		in general: steroid pheromones
3	UGB-like	A	UGB-like	SCGB3A1
3	UGB-like	A	UGB-like	SCGB3A2

Rat prostatein (rat prostatic steroid binding protein) is a three component, tetrameric protein complex built from three lipophilin-like genes in groups 2 and 3. Some sources describe it as the ortholog of lipophilin.^[3]

Extra subfamilies

Subfamilies 4 and 6 were originally described as found in human and mice, but they are now treated as duplicates of existing groups. Subfamily 5 is found in neither to begin with.^[3]

Subfamily 4 formerly included what is now known as group 1B and 2B as group 4A. Pairs of 1B/2B (ABP) genes are arranged head-to-head on the chromosome into "modules" that have been independently duplicated.^[4]

Subfamily 6 was supposed to include human and rat RYD5,^[3] now reassigned Scgb1c1.^[4]

Fel d 1 was supposed to be put into two subfamilies: chain 1 in subfamily 4, and chain 2 in subfamily 5.^[3] Although it is not mentioned in the 2011 update, InterPro matches suggest that CH1 is similar to 1B and CH2 is similar to 2B.^[5] Extra computational research confirms the similarity, invalidating subfamilies 4 and 5 fully.^[6]

References

^ Umland TC, Swaminathan S, Singh G, Warty V, Furey W, Pletcher J, Sax M (August 1994). "Structure of a human Clara cell phospholipid-binding protein-ligand complex at 1.9 A resolution". Nature Structural Biology. 1 (8): 538–45. doi:10.1038/nsb0894-538. PMID 7664082. S2CID 28261246.
^ Härd T, Barnes HJ, Larsson C, Gustafsson JA, Lund J (November 1995). "Solution structure of a mammalian PCB-binding protein in complex with a PCB". Nature Structural Biology. 2 (11): 983–9. doi:10.1038/nsb1195-983. PMID 7583672. S2CID 10369347.
^ ^a ^b ^c ^d ^e Klug J, Beier HM, Bernard A, Chilton BS, Fleming TP, Lehrer RI, et al. (25 January 2006). "Uteroglobin/Clara cell 10-kDa family of proteins: nomenclature committee report". Annals of the New York Academy of Sciences. 923 (1): 348–54. doi:10.1111/j.1749-6632.2000.tb05549.x. PMID 11193777. S2CID 38862724.
^ ^a ^b ^c ^d Jackson BC, Thompson DC, Wright MW, McAndrews M, Bernard A, Nebert DW, Vasiliou V (October 2011). "Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily". Human Genomics. 5 (6): 691–702. doi:10.1186/1479-7364-5-6-691. PMC 3251818. PMID 22155607.
^ "Fel d 1 chain 1", Mus musculus, "Fel d 1 chain 2", Mus musculus. InterPro.
^ Durairaj R, Pageat P, Bienboire-Frosini C (2018). "Another cat and mouse game: Deciphering the evolution of the SCGB superfamily and exploring the molecular similarity of major cat allergen Fel d 1 and mouse ABP using computational approaches". PLOS ONE. 13 (5): e0197618. Bibcode:2018PLoSO..1397618D. doi:10.1371/journal.pone.0197618. PMC 5957422. PMID 29771985.

This protein-related article is a stub. You can help Wikipedia by expanding it.

[1] Umland TC, Swaminathan S, Singh G, Warty V, Furey W, Pletcher J, Sax M (August 1994). "Structure of a human Clara cell phospholipid-binding protein-ligand complex at 1.9 A resolution". Nature Structural Biology. 1 (8): 538–45. doi:10.1038/nsb0894-538. PMID 7664082. S2CID 28261246.

[2] Härd T, Barnes HJ, Larsson C, Gustafsson JA, Lund J (November 1995). "Solution structure of a mammalian PCB-binding protein in complex with a PCB". Nature Structural Biology. 2 (11): 983–9. doi:10.1038/nsb1195-983. PMID 7583672. S2CID 10369347.

[cls-3] Klug J, Beier HM, Bernard A, Chilton BS, Fleming TP, Lehrer RI, et al. (25 January 2006). "Uteroglobin/Clara cell 10-kDa family of proteins: nomenclature committee report". Annals of the New York Academy of Sciences. 923 (1): 348–54. doi:10.1111/j.1749-6632.2000.tb05549.x. PMID 11193777. S2CID 38862724.

[hsa-4] Jackson BC, Thompson DC, Wright MW, McAndrews M, Bernard A, Nebert DW, Vasiliou V (October 2011). "Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily". Human Genomics. 5 (6): 691–702. doi:10.1186/1479-7364-5-6-691. PMC 3251818. PMID 22155607.

[5] "Fel d 1 chain 1", Mus musculus, "Fel d 1 chain 2", Mus musculus. InterPro.

[6] Durairaj R, Pageat P, Bienboire-Frosini C (2018). "Another cat and mouse game: Deciphering the evolution of the SCGB superfamily and exploring the molecular similarity of major cat allergen Fel d 1 and mouse ABP using computational approaches". PLOS ONE. 13 (5): e0197618. Bibcode:2018PLoSO..1397618D. doi:10.1371/journal.pone.0197618. PMC 5957422. PMID 29771985.

[1]

[2]

[3]

[4]

[5]

[6]

Secretoglobin

Structure and function

Classification

Extra subfamilies

References

Portal di Ensiklopedia Dunia