USS Bonita has been the name of more than one ship of the United States Navy, and may refer to:

• USS C-4 (SS-15), originally named USS Bonita, a submarine in commission from 1909 to 1919
• USS Bonita (SP-540), a patrol vessel commissioned in 1917 and sunk in 1918
• USS Bonita (SS-165), originally named USS V-3 (SF-6), a submarine in commission from 1926 to 1937 and from 1940 to 1945
• USS Bonita (SSK-3), originally named USS K-3, a submarine in commission from 1952 to 1958

• A brig engaged in the African slave trade captured on 10 October 1860 has been identified both as Bonita and Bonito but never was part of the United States Navy.

• USS Bonito

List of ships with the same or similar names

This article includes a list of ships with the same or similar names. If an internal link for a specific ship led you here, you may wish to change the link to point directly to the intended ship article, if one exists.